6HKR image
Deposition Date 2018-09-07
Release Date 2018-11-28
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6HKR
Title:
Human Cellular Retinoic Acid Binding Protein II (CRABPII) with bound synthetic retinoid DC271.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cellular retinoic acid-binding protein 2
Gene (Uniprot):CRABP2
Chain IDs:A
Chain Length:138
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Novel Fluorescence Competition Assay for Retinoic Acid Binding Proteins.
ACS Med Chem Lett 9 1297 1300 (2018)
PMID: 30613343 DOI: 10.1021/acsmedchemlett.8b00420

Abstact

Vitamin A derived retinoid compounds have multiple, powerful roles in the cellular growth and development cycle and, as a result, have attracted significant attention from both academic and pharmaceutical research in developing and characterizing synthetic retinoid analogues. Simplifying the hit development workflow for retinoid signaling will improve options available for tackling related pathologies, including tumor growth and neurodegeneration. Here, we present a novel assay that employs an intrinsically fluorescent synthetic retinoid, DC271, which allows direct measurement of the binding of nonlabeled compounds to relevant proteins. The method allows for straightforward initial measurement of binding using existing compound libraries and is followed by calculation of binding constants using a dilution series of plausible hits. The ease of use, high throughput format, and measurement of both qualitative and quantitative binding offer a new direction for retinoid-related pharmacological development.

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Primary Citation of related structures