6HIX image
Deposition Date 2018-08-31
Release Date 2018-09-26
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6HIX
Keywords:
Title:
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the large mitoribosomal subunit
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.39 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:bl27m
Gene (Uniprot):TEOVI_000532300
Chain IDs:A (auth: A0)
Chain Length:185
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bl28m
Gene (Uniprot):Tb06.4F7.280
Chain IDs:B (auth: A1)
Chain Length:241
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ul29m
Gene (Uniprot):Tb09.160.5240
Chain IDs:C (auth: A2)
Chain Length:471
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ul30m
Gene (Uniprot):TbgDal_IX4520
Chain IDs:D (auth: A3)
Chain Length:218
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bl31m
Gene (Uniprot):Tb10.6k15.1920
Chain IDs:E (auth: A4)
Chain Length:183
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bl32m
Gene (Uniprot):Tb04.1H19.670
Chain IDs:F (auth: A5)
Chain Length:80
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bl33m
Gene (Uniprot):Tb04.2L9.1360
Chain IDs:G (auth: A6)
Chain Length:114
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bl35m
Gene (Uniprot):TbgDal_X2260
Chain IDs:H (auth: A8)
Chain Length:181
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bl36m
Gene (Uniprot):TbgDal_IV4820
Chain IDs:I (auth: A9)
Chain Length:184
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polyribonucleotide
Molecule:12S rRNA
Chain IDs:NA (auth: AA)
Chain Length:1178
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bL12m
Chain IDs:JA (auth: AB)
Chain Length:507
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bL12m
Chain IDs:KA (auth: AC), LA (auth: AD)
Chain Length:28
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L3 mitochondrial, putative
Gene (Uniprot):Tb03.5L5.850
Chain IDs:J (auth: AE)
Chain Length:197
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L4/L1 family, putative
Gene (Uniprot):TEOVI_000582800
Chain IDs:K (auth: AF)
Chain Length:189
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bL12m
Chain IDs:MA (auth: AG)
Chain Length:260
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bl9m
Gene (Uniprot):Tb05.6E7.50
Chain IDs:L (auth: AI)
Chain Length:263
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ul10m
Gene (Uniprot):TbgDal_V3970
Chain IDs:M (auth: AJ)
Chain Length:296
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L11, putative
Gene (Uniprot):30M24.135
Chain IDs:N (auth: AK)
Chain Length:342
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L13, putative
Gene (Uniprot):Tb04.5E12.380
Chain IDs:O (auth: AN)
Chain Length:202
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ul15m
Gene (Uniprot):Tb05.6E7.1030
Chain IDs:P (auth: AP)
Chain Length:374
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L16, putative
Gene (Uniprot):Tb07.5F10.790
Chain IDs:Q (auth: AQ)
Chain Length:167
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L17, putative
Gene (Uniprot):Tb08.11J15.1100
Chain IDs:R (auth: AR)
Chain Length:301
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bl19m
Gene (Uniprot):TB927.1.1210
Chain IDs:S (auth: AT)
Chain Length:154
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bl20m
Gene (Uniprot):Tb11.01.1930
Chain IDs:T (auth: AU)
Chain Length:213
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:bl21m
Gene (Uniprot):TbgDal_VII4650
Chain IDs:U (auth: AV)
Chain Length:242
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ul22m
Gene (Uniprot):TbgDal_VII3160
Chain IDs:V (auth: AW)
Chain Length:278
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ul23m
Gene (Uniprot):Tb11.03.0260
Chain IDs:W (auth: AX)
Chain Length:246
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ul24m
Gene (Uniprot):TbgDal_III1550
Chain IDs:X (auth: AY)
Chain Length:378
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml38
Gene (Uniprot):Tb11.01.6620
Chain IDs:Y (auth: Ab)
Chain Length:507
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml40
Gene (Uniprot):TbgDal_X14530
Chain IDs:Z (auth: Ad)
Chain Length:28
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml41
Gene (Uniprot):TbgDal_XI11060
Chain IDs:AA (auth: Ae)
Chain Length:197
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml42
Gene (Uniprot):Tb11.01.1840
Chain IDs:BA (auth: Af)
Chain Length:189
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml43
Gene (Uniprot):Tb04.3I12.430
Chain IDs:CA (auth: Ag)
Chain Length:260
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml46
Gene (Uniprot):TbgDal_VII5370
Chain IDs:DA (auth: Aj)
Chain Length:296
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml49
Gene (Uniprot):Tb05.27M3.100
Chain IDs:EA (auth: Al)
Chain Length:218
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml52
Gene (Uniprot):Tb11.02.2250
Chain IDs:FA (auth: Ao)
Chain Length:259
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml53
Gene (Uniprot):Tb07.13M20.420
Chain IDs:GA (auth: Ap)
Chain Length:374
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml63
Gene (Uniprot):TbgDal_VII8230
Chain IDs:HA (auth: At)
Chain Length:154
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml64
Gene (Uniprot):Tb11.01.3500
Chain IDs:IA (auth: Av)
Chain Length:242
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml67
Gene (Uniprot):TbgDal_XI1730
Chain IDs:OA (auth: BA)
Chain Length:153
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml68
Gene (Uniprot):TbgDal_X580
Chain IDs:PA (auth: BB)
Chain Length:541
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml69
Gene (Uniprot):Tb06.4M18.120
Chain IDs:QA (auth: BC)
Chain Length:523
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:mL70
Chain IDs:RA (auth: BD)
Chain Length:144
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml71
Gene (Uniprot):Tb07.28B13.610
Chain IDs:SA (auth: BE)
Chain Length:449
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml72
Gene (Uniprot):TbgDal_VI3710
Chain IDs:TA (auth: BF)
Chain Length:113
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml73
Gene (Uniprot):Tb07.15M23.630
Chain IDs:UA (auth: BG)
Chain Length:378
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml74
Gene (Uniprot):Tb10.6k15.3290
Chain IDs:VA (auth: BH)
Chain Length:349
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml75
Gene (Uniprot):Tb10.70.7960
Chain IDs:WA (auth: BI)
Chain Length:343
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml76
Gene (Uniprot):Tb11.01.2340
Chain IDs:XA (auth: BJ)
Chain Length:333
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:Chaperone protein DNAj, putative
Gene (Uniprot):TbgDal_VI2240
Chain IDs:YA (auth: BK)
Chain Length:386
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml78
Gene (Uniprot):TbgDal_X13360
Chain IDs:ZA (auth: BL)
Chain Length:312
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml79
Gene (Uniprot):Tb11.01.7140
Chain IDs:AB (auth: BM)
Chain Length:283
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml80
Gene (Uniprot):Tb06.3A7.1270
Chain IDs:BB (auth: BN)
Chain Length:302
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml81
Gene (Uniprot):TbgDal_XI6240
Chain IDs:CB (auth: BO)
Chain Length:262
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml82
Gene (Uniprot):TbgDal_X19420
Chain IDs:DB (auth: BP)
Chain Length:266
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase
Gene (Uniprot):Tb07.28B13.640
Chain IDs:EB (auth: BQ)
Chain Length:231
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml84
Gene (Uniprot):Tb06.4F7.230
Chain IDs:FB (auth: BR)
Chain Length:205
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml85
Gene (Uniprot):Tb09.160.2250
Chain IDs:GB (auth: BS)
Chain Length:198
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml86
Gene (Uniprot):TbgDal_V5660
Chain IDs:HB (auth: BT)
Chain Length:191
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml87
Gene (Uniprot):TbgDal_XI9190
Chain IDs:IB (auth: BU)
Chain Length:185
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml88
Gene (Uniprot):TbgDal_VIII1510
Chain IDs:JB (auth: BV)
Chain Length:190
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml89
Gene (Uniprot):Tb03.27F10.650
Chain IDs:KB (auth: BW)
Chain Length:188
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml90
Gene (Uniprot):Tb06.28P18.570
Chain IDs:LB (auth: BX)
Chain Length:190
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml91
Gene (Uniprot):Tb03.5L5.460
Chain IDs:MB (auth: BY)
Chain Length:172
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase
Gene (Uniprot):Tb11.01.1215
Chain IDs:NB (auth: BZ)
Chain Length:190
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml93
Gene (Uniprot):TbgDal_X13710
Chain IDs:OB (auth: Ba)
Chain Length:153
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml94
Gene (Uniprot):Tb09.160.5050
Chain IDs:PB (auth: Bb)
Chain Length:541
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml95
Gene (Uniprot):Tb10.26.0585
Chain IDs:QB (auth: Bc)
Chain Length:523
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml96
Gene (Uniprot):Tb11.01.6285
Chain IDs:RB (auth: Bd)
Chain Length:144
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml97
Gene (Uniprot):Tb10.61.3115
Chain IDs:SB (auth: Be)
Chain Length:449
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml98
Gene (Uniprot):Tb10.61.3155
Chain IDs:TB (auth: Bf)
Chain Length:113
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml99
Gene (Uniprot):10C8.95
Chain IDs:UB (auth: Bg)
Chain Length:378
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:ml100
Gene (Uniprot):TEOVI_000790200
Chain IDs:VB (auth: Bh)
Chain Length:349
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:WB (auth: UA)
Chain Length:46
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:XB (auth: UB)
Chain Length:40
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:YB (auth: UC), DC (auth: UH)
Chain Length:12
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:ZB (auth: UD)
Chain Length:177
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:AC (auth: UE)
Chain Length:22
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:BC (auth: UF), CC (auth: UG), IC (auth: UN)
Chain Length:24
Number of Molecules:3
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:EC (auth: UI)
Chain Length:17
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:FC (auth: UK)
Chain Length:10
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:GC (auth: UL)
Chain Length:15
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:HC (auth: UM)
Chain Length:6
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:JC (auth: UU)
Chain Length:11
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:KC (auth: UV), MC (auth: UX)
Chain Length:8
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Molecule:UNK
Chain IDs:LC (auth: UW)
Chain Length:7
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Primary Citation
Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science 362 ? ? (2018)
PMID: 30213880 DOI: 10.1126/science.aau7735

Abstact

Ribosomal RNA (rRNA) plays key functional and architectural roles in ribosomes. Using electron microscopy, we determined the atomic structure of a highly divergent ribosome found in mitochondria of Trypanosoma brucei, a unicellular parasite that causes sleeping sickness in humans. The trypanosomal mitoribosome features the smallest rRNAs and contains more proteins than all known ribosomes. The structure shows how the proteins have taken over the role of architectural scaffold from the rRNA: They form an autonomous outer shell that surrounds the entire particle and stabilizes and positions the functionally important regions of the rRNA. Our results also reveal the "minimal" set of conserved rRNA and protein components shared by all ribosomes that help us define the most essential functional elements.

Legend

Protein

Chemical

Disease

Primary Citation of related structures