6HHN image
Deposition Date 2018-08-28
Release Date 2019-06-26
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6HHN
Keywords:
Title:
Crystal structure of L-rhamnose mutarotase FA22100 from Formosa agariphila
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.47 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L-rhamnose mutarotase
Gene (Uniprot):rhaM
Chain IDs:A
Chain Length:115
Number of Molecules:1
Biological Source:Formosa agariphila
Primary Citation
A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan.
Nat.Chem.Biol. 15 803 812 (2019)
PMID: 31285597 DOI: 10.1038/s41589-019-0311-9

Abstact

Marine seaweeds increasingly grow into extensive algal blooms, which are detrimental to coastal ecosystems, tourism and aquaculture. However, algal biomass is also emerging as a sustainable raw material for the bioeconomy. The potential exploitation of algae is hindered by our limited knowledge of the microbial pathways-and hence the distinct biochemical functions of the enzymes involved-that convert algal polysaccharides into oligo- and monosaccharides. Understanding these processes would be essential, however, for applications such as the fermentation of algal biomass into bioethanol or other value-added compounds. Here, we describe the metabolic pathway that enables the marine flavobacterium Formosa agariphila to degrade ulvan, the main cell wall polysaccharide of bloom-forming Ulva species. The pathway involves 12 biochemically characterized carbohydrate-active enzymes, including two polysaccharide lyases, three sulfatases and seven glycoside hydrolases that sequentially break down ulvan into fermentable monosaccharides. This way, the enzymes turn a previously unexploited renewable into a valuable and ecologically sustainable bioresource.

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Primary Citation of related structures