6HHB image
Deposition Date 2018-08-27
Release Date 2019-09-11
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6HHB
Title:
Structure of iron bound IbpS from Dickeya dadantii
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ABC-type Fe3+ transport system, periplasmic component
Gene (Uniprot):Dda3937_02937
Chain IDs:A, B, C, D
Chain Length:373
Number of Molecules:4
Biological Source:Dickeya dadantii (strain 3937)
Primary Citation
A secreted metal-binding protein protects necrotrophic phytopathogens from reactive oxygen species.
Nat Commun 10 4853 4853 (2019)
PMID: 31649262 DOI: 10.1038/s41467-019-12826-x

Abstact

Few secreted proteins involved in plant infection common to necrotrophic bacteria, fungi and oomycetes have been identified except for plant cell wall-degrading enzymes. Here we study a family of iron-binding proteins that is present in Gram-negative and Gram-positive bacteria, fungi, oomycetes and some animals. Homolog proteins in the phytopathogenic bacterium Dickeya dadantii (IbpS) and the fungal necrotroph Botrytis cinerea (BcIbp) are involved in plant infection. IbpS is secreted, can bind iron and copper, and protects the bacteria against H2O2-induced death. Its 1.7 Å crystal structure reveals a classical Venus Fly trap fold that forms dimers in solution and in the crystal. We propose that secreted Ibp proteins binds exogenous metals and thus limit intracellular metal accumulation and ROS formation in the microorganisms.

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Primary Citation of related structures