6HDN image
Deposition Date 2018-08-18
Release Date 2018-09-26
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6HDN
Keywords:
Title:
Crystal structure of human ATAD2 bromodomain in complex with 3-methyl-8-((8-methyl-8-azabicyclooctan-3-yl)amino)-1,7-naphthyridin-2(1H)-one
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ATPase family AAA domain-containing protein 2
Gene (Uniprot):ATAD2
Chain IDs:A
Chain Length:130
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Aiming to Miss a Moving Target: Bromo and Extra Terminal Domain (BET) Selectivity in Constrained ATAD2 Inhibitors.
J. Med. Chem. 61 8321 8336 (2018)
PMID: 30226378 DOI: 10.1021/acs.jmedchem.8b00862

Abstact

ATAD2 is a cancer-associated protein whose bromodomain has been described as among the least druggable of its class. In our recent disclosure of the first chemical probe against this bromodomain, GSK8814 (6), we described the use of a conformationally constrained methoxy piperidine to gain selectivity over the BET bromodomains. Here we describe an orthogonal conformational restriction strategy of the piperidine ring to give potent and selective tropane inhibitors and show structural insights into why this was more challenging than expected. Greater understanding of why different rational approaches succeeded or failed should help in the future design of selectivity in the bromodomain family.

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Primary Citation of related structures