6HCN image
Deposition Date 2018-08-15
Release Date 2019-02-13
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6HCN
Keywords:
Title:
Adenovirus Type 5 Fiber Knob protein at 1.49A resolution
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.49 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fiber protein
Gene (Uniprot):L5
Chain IDs:A, C
Chain Length:186
Number of Molecules:2
Biological Source:Human adenovirus 5
Polymer Type:polypeptide(L)
Molecule:Fiber protein
Gene (Uniprot):L5
Chain IDs:B
Chain Length:188
Number of Molecules:1
Biological Source:Human adenovirus 5
Primary Citation
Diversity within the adenovirus fiber knob hypervariable loops influences primary receptor interactions.
Nat Commun 10 741 741 (2019)
PMID: 30765704 DOI: 10.1038/s41467-019-08599-y

Abstact

Adenovirus based vectors are of increasing importance for wide ranging therapeutic applications. As vaccines, vectors derived from human adenovirus species D serotypes 26 and 48 (HAdV-D26/48) are demonstrating promising efficacy as protective platforms against infectious diseases. Significant clinical progress has been made, yet definitive studies underpinning mechanisms of entry, infection, and receptor usage are currently lacking. Here, we perform structural and biological analysis of the receptor binding fiber-knob protein of HAdV-D26/48, reporting crystal structures, and modelling putative interactions with two previously suggested attachment receptors, CD46 and Coxsackie and Adenovirus Receptor (CAR). We provide evidence of a low affinity interaction with CAR, with modelling suggesting affinity is attenuated through extended, semi-flexible loop structures, providing steric hindrance. Conversely, in silico and in vitro experiments are unable to provide evidence of interaction between HAdV-D26/48 fiber-knob with CD46, or with Desmoglein 2. Our findings provide insight into the cell-virus interactions of HAdV-D26/48, with important implications for the design and engineering of optimised Ad-based therapeutics.

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Primary Citation of related structures