6HBY image
Entry Detail
PDB ID:
6HBY
Keywords:
Title:
HLA class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-08-13
Release Date:
2019-08-14
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HLA class II histocompatibility antigen, DR alpha chain
Chain IDs:A
Chain Length:178
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:HLA class II histocompatibility antigen, DRB1-1 beta chain
Chain IDs:B, E
Chain Length:191
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ARRPPLAELAALNLSGSRL 5T4 tumour epitope
Chain IDs:C, F
Chain Length:19
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:HLA class II histocompatibility antigen, DR alpha chain
Chain IDs:D
Chain Length:180
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Human leukocyte antigen (HLA) class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope.
J.Biol.Chem. 294 20246 20258 (2019)
PMID: 31619516 DOI: 10.1074/jbc.RA119.009437

Abstact

CD4+ T-cells recognize peptide antigens, in the context of human leukocyte antigen (HLA) class II molecules (HLA-II), which through peptide-flanking residues (PFRs) can extend beyond the limits of the HLA binding. The role of the PFRs during antigen recognition is not fully understood; however, recent studies have indicated that these regions can influence T-cell receptor (TCR) affinity and pHLA-II stability. Here, using various biochemical approaches including peptide sensitivity ELISA and ELISpot assays, peptide-binding assays and HLA-II tetramer staining, we focused on CD4+ T-cell responses against a tumor antigen, 5T4 oncofetal trophoblast glycoprotein (5T4), which have been associated with improved control of colorectal cancer. Despite their weak TCR-binding affinity, we found that anti-5T4 CD4+ T-cells are polyfunctional and that their PFRs are essential for TCR recognition of the core bound nonamer. The high-resolution (1.95 Å) crystal structure of HLA-DR1 presenting the immunodominant 20-mer peptide 5T4111-130, combined with molecular dynamic simulations, revealed how PFRs explore the HLA-proximal space to contribute to antigen reactivity. These findings advance our understanding of what constitutes an HLA-II epitope and indicate that PFRs can tune weak affinity TCR-pHLA-II interactions.

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