6HBM image
Deposition Date 2018-08-10
Release Date 2019-05-01
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6HBM
Title:
Crystal structure of MSMEG_1712 from Mycobacterium smegmatis in complex with alpha-L-arabinofuranose
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.76 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
I 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ABC transporter periplasmic-binding protein YtfQ
Gene (Uniprot):MSMEG_1712
Chain IDs:A, B
Chain Length:320
Number of Molecules:2
Biological Source:Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Primary Citation
Detection and Characterization of a Mycobacterial L-Arabinofuranose ABC Transporter Identified with a Rapid Lipoproteomics Protocol.
Cell Chem Biol 26 852 ? (2019)
PMID: 31006617 DOI: 10.1016/j.chembiol.2019.03.002

Abstact

Nutrient uptake is essential for survival of organisms, and carbohydrates serve as a crucial carbon and energy source for most microorganisms. Given the importance of mycobacteria as human pathogens a detailed knowledge of carbohydrate uptake transporters is highly desirable, but currently available information is severely limited and mainly based on in silico analyses. Moreover, there is only very little data available on the in vitro characterization of carbohydrate transporters from mycobacterial species. To overcome these significant limitations there is a strong demand for innovative approaches to experimentally match substrates to ATP-binding cassette (ABC) transporters in a straightforward manner. Our study focuses on the model organism Mycobacterium smegmatis and identifies a mycobacterial ABC transport system based on a rapid label-free mass spectrometry lipoproteomics assay with broad applicability. Further validation and X-ray structure analyses reveal a highly selective mycobacterial L-arabinose uptake system.

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