6HAW image
Deposition Date 2018-08-08
Release Date 2019-01-16
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6HAW
Title:
Crystal structure of bovine cytochrome bc1 in complex with 2-pyrazolyl quinolone inhibitor WDH2G7
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
3.45 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 1, mitochondrial
Gene (Uniprot):UQCRC1
Chain IDs:A
Chain Length:438
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 2, mitochondrial
Gene (Uniprot):UQCRC2
Chain IDs:B
Chain Length:413
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b
Gene (Uniprot):MT-CYB
Chain IDs:C
Chain Length:378
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome c1, heme protein, mitochondrial
Gene (Uniprot):CYC1
Chain IDs:D
Chain Length:239
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit Rieske, mitochondrial
Gene (Uniprot):UQCRFS1
Chain IDs:E
Chain Length:196
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 7
Gene (Uniprot):UQCRB
Chain IDs:F
Chain Length:99
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 8
Gene (Uniprot):UQCRQ
Chain IDs:G
Chain Length:74
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 6, mitochondrial
Gene (Uniprot):UQCRH
Chain IDs:H
Chain Length:64
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit Rieske, mitochondrial
Gene (Uniprot):UQCRFS1
Chain IDs:I
Chain Length:46
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 9
Gene (Uniprot):UQCR10
Chain IDs:J
Chain Length:59
Number of Molecules:1
Biological Source:Bos taurus
Primary Citation
Potent Antimalarial 2-Pyrazolyl Quinolonebc1(Qi) Inhibitors with Improved Drug-like Properties.
ACS Med Chem Lett 9 1205 1210 (2018)
PMID: 30613327 DOI: 10.1021/acsmedchemlett.8b00371

Abstact

A series of 2-pyrazolyl quinolones has been designed and synthesized in 5-7 steps to optimize for both in vitro antimalarial potency and various in vitro drug metabolism and pharmacokinetics (DMPK) features. The most potent compounds display no cross-resistance with multidrug resistant parasite strains (W2) compared to drug sensitive strains (3D7), with IC50 (concentration of drug required to achieve half maximal growth suppression) values in the range of 15-33 nM. Furthermore, members of the series retain moderate activity against the atovaquone-resistant parasite isolate (TM90C2B). The described 2-pyrazoyl series displays improved DMPK properties, including improved aqueous solubility compared to previously reported quinolone series and acceptable safety margin through in vitro cytotoxicity assessment. The 2-pyrazolyl quinolones are believed to bind to the ubiquinone-reducing Qi site of the parasite bc 1 complex, which is supported by crystallographic studies of bovine cytochrome bc 1 complex.

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