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6H8T image
Deposition Date 2018-08-03
Release Date 2018-09-12
Last Version Date 2025-10-01
Entry Detail
PDB ID:
6H8T
Keywords:
METAL BINDING PROTEIN
Title:
Crystal structure of Papain modify by achiral Ru(II)complex
Biological Source:
Source Organism(s):
Carica papaya (Taxon ID: 3649)
Expression System(s):
Carica papaya
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.10 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
6H8T validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Papain
Chain IDs:A, B (auth: J)
Chain Length:212
Number of Molecules:2
Biological Source:Carica papaya
UniProt ID:P00784 Pfam ID:PF00112 EC:3.4.22.2
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
OMX A TYR modified residue
Ligand Molecules
ACT
CL
NA
SO4
YXX
YXZ
Primary Citation
Crystallographic evidence for unexpected selective tyrosine hydroxylations in an aerated achiral Ru-papain conjugate.
Metallomics 10 1452 1459 (2018)
PMID: 30175357 DOI: 10.1039/c8mt00160j

Abstact

The X-ray structure of an aerated achiral Ru-papain conjugate has revealed the hydroxylation of two tyrosine residues found near the ruthenium ion. The most likely mechanism involves a ruthenium-bound superoxide as the reactive species responsible for the first hydroxylation and the resulting high valent Ru(iv)[double bond, length as m-dash]O species for the second one.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
4KP9
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