6H6X image
Deposition Date 2018-07-30
Release Date 2019-02-27
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6H6X
Keywords:
Title:
Structure of an evolved dimeric form of the UbiD-class enzyme HmfF from Pelotomaculum thermopropionicum in complex with prFMN
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
Gene (Uniprot):UbiD
Mutations:A315N, N348R, F351D, T355N, A388P, F393T, V395F, M399R
Chain IDs:A (auth: B), B (auth: A)
Chain Length:448
Number of Molecules:2
Biological Source:Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
Primary Citation
Enzymatic Carboxylation of 2-Furoic Acid Yields 2,5-Furandicarboxylic Acid (FDCA).
Acs Catalysis 9 2854 2865 (2019)
PMID: 31057985 DOI: 10.1021/acscatal.8b04862

Abstact

The biological production of FDCA is of considerable value as a potential replacement for petrochemical-derived monomers such as terephthalate, used in polyethylene terephthalate (PET) plastics. HmfF belongs to an uncharacterized branch of the prenylated flavin (prFMN) dependent UbiD family of reversible (de)carboxylases and is proposed to convert 2,5-furandicarboxylic acid (FDCA) to furoic acid in vivo. We present a detailed characterization of HmfF and demonstrate that HmfF can catalyze furoic acid carboxylation at elevated CO2 levels in vitro. We report the crystal structure of a thermophilic HmfF from Pelotomaculum thermopropionicum, revealing that the active site located above the prFMN cofactor contains a furoic acid/FDCA binding site composed of residues H296-R304-R331 specific to the HmfF branch of UbiD enzymes. Variants of the latter are compromised in activity, while H296N alters the substrate preference to pyrrole compounds. Solution studies and crystal structure determination of an engineered dimeric form of the enzyme revealed an unexpected key role for a UbiD family wide conserved Leu residue in activity. The structural insights into substrate and cofactor binding provide a template for further exploitation of HmfF in the production of FDCA plastic precursors and improve our understanding of catalysis by members of the UbiD enzyme family.

Legend

Protein

Chemical

Disease

Primary Citation of related structures