6H6H image
Deposition Date 2018-07-27
Release Date 2019-08-14
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6H6H
Keywords:
IMMUNE SYSTEM
Title:
Crystal structures of the murine class I major histocompatibility complex H-2Dbm13 in complex with adenovirus-derived peptide Ad10
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
unidentified adenovirus (Taxon ID: 10535)
Host Organism:
Escherichia coli BL21
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.40 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1
6H6H validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H-2D cell surface glycoprotein
Gene (Uniprot):H2-D1
Chain IDs:A, B (auth: D)
Chain Length:338
Number of Molecules:2
Biological Source:Mus musculus
UniProt ID:Q31167 Pfam ID:PF00129, PF07654, PF06623
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Chain IDs:C (auth: B), D (auth: E)
Chain Length:99
Number of Molecules:2
Biological Source:Mus musculus
UniProt ID:P01887 Pfam ID:PF07654
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SER-GLY-PRO-SER-ASN-THR-PRO-PRO-GLU-ILE
Chain IDs:E (auth: C), F
Chain Length:10
Number of Molecules:2
Biological Source:unidentified adenovirus
UniProt ID:P03255
Ligand Molecules
GOL
SO4
Primary Citation
Crystal structures of H-2Db and H-2Dbm13 with cancer-associated Ad 10 peptide reveal that subtle changes in the peptide environment impact thermostability and alloreactivity
to be published ? ? ? (?)
Primary Citation of related structures
6H6H