6H6F image
Deposition Date 2018-07-27
Release Date 2018-10-03
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6H6F
Keywords:
Title:
PTC3 holotoxin complex from Photorhabdus luminiscens - Mutant TcC-D651A
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.72 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TcdA1
Gene (Uniprot):tcdA
Chain IDs:A, B, C, D, E
Chain Length:2516
Number of Molecules:5
Biological Source:Photorhabdus luminescens
Polymer Type:polypeptide(L)
Molecule:TcdB2,TccC3,TccC3
Gene (Uniprot):TccC3, tcdB2
Chain IDs:F
Chain Length:2434
Number of Molecules:1
Biological Source:Photorhabdus luminescens
Ligand Molecules
Primary Citation
Tc toxin activation requires unfolding and refolding of a beta-propeller.
Nature 563 209 213 (2018)
PMID: 30232455 DOI: 10.1038/s41586-018-0556-6

Abstact

Tc toxins secrete toxic enzymes into host cells using a unique syringe-like injection mechanism. They are composed of three subunits, TcA, TcB and TcC. TcA forms the translocation channel and the TcB-TcC heterodimer functions as a cocoon that shields the toxic enzyme. Binding of the cocoon to the channel triggers opening of the cocoon and translocation of the toxic enzyme into the channel. Here we show in atomic detail how the assembly of the three components activates the toxin. We find that part of the cocoon completely unfolds and refolds into an alternative conformation upon binding. The presence of the toxic enzyme inside the cocoon is essential for its subnanomolar binding affinity for the TcA subunit. The enzyme passes through a narrow negatively charged constriction site inside the cocoon, probably acting as an extruder that releases the unfolded protein with its C terminus first into the translocation channel.

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Primary Citation of related structures