6GYB image
Deposition Date 2018-06-28
Release Date 2018-10-24
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6GYB
Title:
Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.28 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VirB7
Chain IDs:A (auth: a), D (auth: d), G (auth: g), J (auth: j), M (auth: m), P (auth: p), S (auth: s), V (auth: A), Y (auth: D), BA (auth: G), EA (auth: J), HA (auth: M), KA (auth: P), NA (auth: S)
Chain Length:139
Number of Molecules:14
Biological Source:Xanthomonas axonopodis pv. citri (strain 306)
Polymer Type:polypeptide(L)
Molecule:VirB9 protein
Chain IDs:B (auth: b), E (auth: e), H (auth: h), K (auth: k), N (auth: n), Q (auth: q), T (auth: t), W (auth: B), Z (auth: E), CA (auth: H), FA (auth: K), IA (auth: N), LA (auth: Q), OA (auth: T)
Chain Length:255
Number of Molecules:14
Biological Source:Xanthomonas axonopodis pv. citri (strain 306)
Polymer Type:polypeptide(L)
Molecule:VirB10 protein
Chain IDs:C (auth: c), F (auth: f), I (auth: i), L (auth: l), O (auth: o), R (auth: r), U (auth: u), X (auth: C), AA (auth: F), DA (auth: I), GA (auth: L), JA (auth: O), MA (auth: R), PA (auth: U)
Chain Length:406
Number of Molecules:14
Biological Source:Xanthomonas axonopodis pv. citri (strain 306)
Ligand Molecules
Primary Citation
Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri.
Nat Microbiol 3 1429 1440 (2018)
PMID: 30349081 DOI: 10.1038/s41564-018-0262-z

Abstact

Type IV secretion (T4S) systems form the most common and versatile class of secretion systems in bacteria, capable of injecting both proteins and DNAs into host cells. T4S systems are typically composed of 12 components that form 2 major assemblies: the inner membrane complex embedded in the inner membrane and the core complex embedded in both the inner and outer membranes. Here we present the 3.3 Å-resolution cryo-electron microscopy model of the T4S system core complex from Xanthomonas citri, a phytopathogen that utilizes this system to kill bacterial competitors. An extensive mutational investigation was performed to probe the vast network of protein-protein interactions in this 1.13-MDa assembly. This structure expands our knowledge of the molecular details of T4S system organization, assembly and evolution.

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Primary Citation of related structures