6GY6 image
Deposition Date 2018-06-28
Release Date 2018-07-25
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6GY6
Keywords:
Title:
XaxAB pore complex from Xenorhabdus nematophila
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:XaxA
Gene (Uniprot):xaxA
Chain IDs:A, O (auth: C), P (auth: D), Q (auth: E), R (auth: F), S (auth: I), T (auth: J), U (auth: M), V (auth: P), W (auth: Q), X (auth: R), Y (auth: S), Z (auth: T)
Chain Length:424
Number of Molecules:13
Biological Source:Xenorhabdus nematophila ATCC 19061
Polymer Type:polypeptide(L)
Molecule:XaxB
Gene (Uniprot):xaxB
Chain IDs:B, C (auth: G), D (auth: H), E (auth: K), F (auth: L), G (auth: N), H (auth: O), I (auth: U), J (auth: V), K (auth: W), L (auth: X), M (auth: Y), N (auth: Z)
Chain Length:338
Number of Molecules:13
Biological Source:Xenorhabdus nematophila ATCC 19061
Ligand Molecules
Primary Citation
Membrane insertion of alpha-xenorhabdolysin in near-atomic detail.
Elife 7 ? ? (2018)
PMID: 30010541 DOI: 10.7554/eLife.38017

Abstact

α-Xenorhabdolysins (Xax) are α-pore-forming toxins (α-PFT) that form 1-1.3 MDa large pore complexes to perforate the host cell membrane. PFTs are used by a variety of bacterial pathogens to attack host cells. Due to the lack of structural information, the molecular mechanism of action of Xax toxins is poorly understood. Here, we report the cryo-EM structure of the XaxAB pore complex from Xenorhabdus nematophila and the crystal structures of the soluble monomers of XaxA and XaxB. The structures reveal that XaxA and XaxB are built similarly and appear as heterodimers in the 12-15 subunits containing pore, classifying XaxAB as bi-component α-PFT. Major conformational changes in XaxB, including the swinging out of an amphipathic helix are responsible for membrane insertion. XaxA acts as an activator and stabilizer for XaxB that forms the actual transmembrane pore. Based on our results, we propose a novel structural model for the mechanism of Xax intoxication.

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Disease

Primary Citation of related structures