6GWJ image
Deposition Date 2018-06-25
Release Date 2019-07-03
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6GWJ
Title:
Human OSGEP / LAGE3 / GON7 complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:EKC/KEOPS complex subunit LAGE3
Gene (Uniprot):LAGE3
Chain IDs:A (auth: B)
Chain Length:143
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:EKC/KEOPS complex subunit GON7
Gene (Uniprot):GON7
Chain IDs:B (auth: D)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Probable tRNA N6-adenosine threonylcarbamoyltransferase
Gene (Uniprot):OSGEP
Chain IDs:C (auth: K)
Chain Length:335
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation

Abstact

N6-threonyl-carbamoylation of adenosine 37 of ANN-type tRNAs (t6A) is a universal modification essential for translational accuracy and efficiency. The t6A pathway uses two sequentially acting enzymes, YRDC and OSGEP, the latter being a subunit of the multiprotein KEOPS complex. We recently identified mutations in genes encoding four out of the five KEOPS subunits in children with Galloway-Mowat syndrome (GAMOS), a clinically heterogeneous autosomal recessive disease characterized by early-onset steroid-resistant nephrotic syndrome and microcephaly. Here we show that mutations in YRDC cause an extremely severe form of GAMOS whereas mutations in GON7, encoding the fifth KEOPS subunit, lead to a milder form of the disease. The crystal structure of the GON7/LAGE3/OSGEP subcomplex shows that the intrinsically disordered GON7 protein becomes partially structured upon binding to LAGE3. The structure and cellular characterization of GON7 suggest its involvement in the cellular stability and quaternary arrangement of the KEOPS complex.

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Protein

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Disease

Primary Citation of related structures