6GSI image
Deposition Date 2018-06-14
Release Date 2019-01-16
Last Version Date 2025-07-09
Entry Detail
PDB ID:
6GSI
Keywords:
Title:
Feline Calicivirus Strain F9 bound to a soluble ectodomain fragment of feline junctional adhesion molecule A - leading to assembly of a portal structure at a unique three-fold axis.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.75 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Capsid protein
Gene (Uniprot):CPP76
Chain IDs:A, B, C, D
Chain Length:669
Number of Molecules:4
Biological Source:Feline calicivirus strain F9
Polymer Type:polypeptide(L)
Molecule:Junctional adhesion molecule A
Gene (Uniprot):F11R
Chain IDs:E, F, G, H
Chain Length:202
Number of Molecules:4
Biological Source:Felis catus
Polymer Type:polypeptide(L)
Molecule:VP2
Gene (Uniprot):ORF3
Chain IDs:I, J, K, L
Chain Length:106
Number of Molecules:4
Biological Source:Feline calicivirus strain F9
Primary Citation
Calicivirus VP2 forms a portal-like assembly following receptor engagement.
Nature 565 377 381 (2019)
PMID: 30626974 DOI: 10.1038/s41586-018-0852-1

Abstact

To initiate infection, many viruses enter their host cells by triggering endocytosis following receptor engagement. However, the mechanisms by which non-enveloped viruses escape the endosome are poorly understood. Here we present near-atomic-resolution cryo-electron microscopy structures for feline calicivirus both undecorated and labelled with a soluble fragment of its cellular receptor, feline junctional adhesion molecule A. We show that VP2, a minor capsid protein encoded by all caliciviruses1,2, forms a large portal-like assembly at a unique three-fold axis of symmetry, following receptor engagement. This assembly-which was not detected in undecorated virions-is formed of twelve copies of VP2, arranged with their hydrophobic N termini pointing away from the virion surface. Local rearrangement at the portal site leads to the opening of a pore in the capsid shell. We hypothesize that the portal-like assembly functions as a channel for the delivery of the calicivirus genome, through the endosomal membrane, into the cytoplasm of a host cell, thereby initiating infection. VP2 was previously known to be critical for the production of infectious virus3; our findings provide insights into its structure and function that advance our understanding of the Caliciviridae.

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Primary Citation of related structures