6GSE image
Deposition Date 2018-06-14
Release Date 2019-05-22
Last Version Date 2024-06-19
Entry Detail
PDB ID:
6GSE
Keywords:
Title:
Solution structure of the capsid domain from the activity-regulated cytoskeleton-associated protein, Arc
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
80
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Activity-regulated cytoskeleton-associated protein
Gene (Uniprot):Arc
Chain IDs:A
Chain Length:159
Number of Molecules:1
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
The Capsid Domain of Arc Changes Its Oligomerization Propensity through Direct Interaction with the NMDA Receptor.
Structure 27 1071 1081.e5 (2019)
PMID: 31080121 DOI: 10.1016/j.str.2019.04.001

Abstact

The activity-regulated cytoskeleton-associated protein, Arc, is highly expressed in neuronal dendrites and is involved in synaptic scaling and plasticity. Arc exhibits homology to the capsid-forming Gag proteins from retroviruses and can encapsulate its own mRNA and transport it to neighboring neurons. However, the molecular events that lead to the assembly of Arc capsids and how the capsid formation is regulated are not known. Here we show that the capsid domain of Arc may transiently form homogeneous oligomers of similar size as capsids formed by full-length Arc. We determined a high-resolution structure of the monomeric Arc capsid domain and mapped the initial structural change in the oligomerization process to the N-terminal part of the capsid domain. Peptide ligands from the NMDA receptor subunits inhibit oligomerization, which suggests that Arc's ability to transfer mRNA between cells may be regulated by protein-protein interactions at the synapse.

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Primary Citation of related structures