6GSA image
Deposition Date 2018-06-13
Release Date 2018-08-01
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6GSA
Title:
Core Centromere Binding Factor 3 (CBF3) with monomeric Ndc10
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Centromere DNA-binding protein complex CBF3 subunit B
Gene (Uniprot):CEP3
Mutagens:Truncation of the N-terminal domain, UNP residues 1-46
Chain IDs:A, B
Chain Length:584
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Suppressor of kinetochore protein 1
Gene (Uniprot):SKP1
Chain IDs:C
Chain Length:197
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Centromere DNA-binding protein complex CBF3 subunit C
Gene (Uniprot):CTF13
Chain IDs:D
Chain Length:519
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Centromere DNA-binding protein complex CBF3 subunit A
Gene (Uniprot):CBF2
Mutagens:Construct comprising residues 1-554 with C-terminal Strep tag
Chain IDs:E
Chain Length:562
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
Insights into Centromere DNA Bending Revealed by the Cryo-EM Structure of the Core Centromere Binding Factor 3 with Ndc10.
Cell Rep 24 744 754 (2018)
PMID: 30021170 DOI: 10.1016/j.celrep.2018.06.068

Abstact

The centromere binding factor 3 (CBF3) complex binds the third centromere DNA element in organisms with point centromeres, such as S. cerevisiae. It is an essential complex for assembly of the kinetochore in these organisms, as it facilitates genetic centromere specification and allows association of all other kinetochore components. We determined high-resolution structures of the core complex of CBF3 alone and in association with a monomeric construct of Ndc10, using cryoelectron microscopy (cryo-EM). We identify the DNA-binding site of the complex and present a model in which CBF3 induces a tight bend in centromeric DNA, thus facilitating assembly of the centromeric nucleosome.

Legend

Protein

Chemical

Disease

Primary Citation of related structures