6GQ9 image
Deposition Date 2018-06-07
Release Date 2019-06-19
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6GQ9
Keywords:
Title:
Solution structure of the hazel allergen Cor a 1.0401
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
240
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Major allergen Cor a 1.0401
Gene (Uniprot):CORA1.0401
Chain IDs:A
Chain Length:161
Number of Molecules:1
Biological Source:Corylus avellana
Ligand Molecules
Primary Citation
Identification of a natural ligand of the hazel allergen Cor a 1.
Sci Rep 9 8714 8714 (2019)
PMID: 31213622 DOI: 10.1038/s41598-019-44999-2

Abstact

Hazelnut is one of the most frequent causes of food allergy. The major hazel allergen in Northern Europe is Cor a 1, which is homologous to the major birch pollen allergen Bet v 1. Both allergens belong to the pathogenesis related class PR-10. We determined the solution structure of Cor a 1.0401 from hazelnut and identified a natural ligand of the protein. The structure reveals the protein fold characteristic for PR-10 family members, which consists of a seven-stranded antiparallel β-sheet, two short α-helices arranged in V-shape and a long C-terminal α-helix encompassing a hydrophobic pocket. However, despite the structural similarities between Cor a 1 and Bet v 1, they bind different ligands. We have shown previously that Bet v 1 binds to quercetin-3-O-sophoroside. Here, we isolated Cor a 1 from hazel pollen and identified the bound ligand, quercetin-3-O-(2"-O-β-D-glucopyranosyl)-β-D-galactopyranoside, by mass spectrometry and nuclear magnetic resonance spectroscopy (NMR). NMR experiments were performed to confirm binding. Remarkably, although it has been shown that PR-10 allergens show promiscuous binding behaviour in vitro, we can demonstrate that Cor a 1.0401 and Bet v 1.0101 exhibit highly selective binding for their specific ligand but not for the respective ligand of the other allergen.

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Primary Citation of related structures