6GPG image
Deposition Date 2018-06-05
Release Date 2018-08-08
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6GPG
Title:
Structure of the RIG-I Singleton-Merten syndrome variant C268F
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.89 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Probable ATP-dependent RNA helicase DDX58
Gene (Uniprot):RIGI
Mutations:C268F
Chain IDs:C (auth: A)
Chain Length:714
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*G)-3')
Chain IDs:A (auth: B), B (auth: C)
Chain Length:14
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Unified mechanisms for self-RNA recognition by RIG-I Singleton-Merten syndrome variants.
Elife 7 ? ? (2018)
PMID: 30047865 DOI: 10.7554/eLife.38958

Abstact

The innate immune sensor retinoic acid-inducible gene I (RIG-I) detects cytosolic viral RNA and requires a conformational change caused by both ATP and RNA binding to induce an active signaling state and to trigger an immune response. Previously, we showed that ATP hydrolysis removes RIG-I from lower-affinity self-RNAs (<xref ref-type="bibr" rid="bib19">Lässig et al., 2015</xref>), revealing how ATP turnover helps RIG-I distinguish viral from self-RNA and explaining why a mutation in a motif that slows down ATP hydrolysis causes the autoimmune disease Singleton-Merten syndrome (SMS). Here we show that a different, mechanistically unexplained SMS variant, C268F, which is localized in the ATP-binding P-loop, can signal independently of ATP but is still dependent on RNA. The structure of RIG-I C268F in complex with double-stranded RNA reveals that C268F helps induce a structural conformation in RIG-I that is similar to that induced by ATP. Our results uncover an unexpected mechanism to explain how a mutation in a P-loop ATPase can induce a gain-of-function ATP state in the absence of ATP.

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