6GOS image
Entry Detail
PDB ID:
6GOS
Title:
E. coli Microcin synthetase McbBCD complex with pro-MccB17 bound
Biological Source:
PDB Version:
Deposition Date:
2018-06-04
Release Date:
2019-01-30
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Microcin B17-processing protein McbB
Chain IDs:B (auth: 1), C (auth: 2)
Chain Length:295
Number of Molecules:2
Biological Source:Escherichia coli str. K-12 substr. MG1655
Polymer Type:polypeptide(L)
Description:Bacteriocin microcin B17
Chain IDs:A
Chain Length:77
Number of Molecules:1
Biological Source:Escherichia coli str. K-12 substr. MG1655
Polymer Type:polypeptide(L)
Description:Microcin B17-processing protein McbC
Chain IDs:D (auth: C)
Chain Length:272
Number of Molecules:1
Biological Source:Escherichia coli str. K-12 substr. MG1655
Polymer Type:polypeptide(L)
Description:Microcin B17-processing protein McbD
Chain IDs:E (auth: D)
Chain Length:396
Number of Molecules:1
Biological Source:Escherichia coli str. K-12 substr. MG1655
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
F6N A SER modified residue
OTZ A CYS modified residue
TOZ A SER modified residue
Primary Citation
Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison.
Mol. Cell 73 749 762.e5 (2019)
PMID: 30661981 DOI: 10.1016/j.molcel.2018.11.032

Abstact

The introduction of azole heterocycles into a peptide backbone is the principal step in the biosynthesis of numerous compounds with therapeutic potential. One of them is microcin B17, a bacterial topoisomerase inhibitor whose activity depends on the conversion of selected serine and cysteine residues of the precursor peptide to oxazoles and thiazoles by the McbBCD synthetase complex. Crystal structures of McbBCD reveal an octameric B4C2D2 complex with two bound substrate peptides. Each McbB dimer clamps the N-terminal recognition sequence, while the C-terminal heterocycle of the modified peptide is trapped in the active site of McbC. The McbD and McbC active sites are distant from each other, which necessitates alternate shuttling of the peptide substrate between them, while remaining tethered to the McbB dimer. An atomic-level view of the azole synthetase is a starting point for deeper understanding and control of biosynthesis of a large group of ribosomally synthesized natural products.

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Primary Citation of related structures