6GNI image
Deposition Date 2018-05-30
Release Date 2018-10-17
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6GNI
Title:
Cryo-tomography and subtomogram averaging of Sar1-Sec23-Sec24 - fitted model.
Biological Source:
Method Details:
Experimental Method:
Resolution:
4.90 Å
Aggregation State:
3D ARRAY
Reconstruction Method:
SUBTOMOGRAM AVERAGING
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein transport protein SEC23
Gene (Uniprot):SEC23
Chain IDs:A
Chain Length:767
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small COPII coat GTPase SAR1
Gene (Uniprot):SAR1
Chain IDs:C (auth: B)
Chain Length:167
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein transport protein SEC24
Gene (Uniprot):SEC24
Chain IDs:B (auth: E)
Chain Length:794
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
Subtomogram averaging of COPII assemblies reveals how coat organization dictates membrane shape.
Nat Commun 9 4154 4154 (2018)
PMID: 30297805 DOI: 10.1038/s41467-018-06577-4

Abstact

Eukaryotic cells employ membrane-bound carriers to transport cargo between compartments in a process essential to cell functionality. Carriers are generated by coat complexes that couple cargo capture to membrane deformation. The COPII coat mediates export from the endoplasmic reticulum by assembling in inner and outer layers, yielding carriers of variable shape and size that allow secretion of thousands of diverse cargo. Despite detailed understanding of COPII subunits, the molecular mechanisms of coat assembly and membrane deformation are unclear. Here we present a 4.9 Å cryo-tomography subtomogram averaging structure of in vitro-reconstituted membrane-bound inner coat. We show that the outer coat (Sec13-Sec31) bridges inner coat subunits (Sar1-Sec23-Sec24), promoting their assembly into a tight lattice. We directly visualize the membrane-embedded Sar1 amphipathic helix, revealing that lattice formation induces parallel helix insertions, yielding tubular curvature. We propose that regulators like the procollagen receptor TANGO1 modulate this mechanism to determine vesicle shape and size.

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