6GMF image
Deposition Date 2018-05-25
Release Date 2019-03-27
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6GMF
Keywords:
Title:
Structure of Cytochrome P450 CYP109Q5 from Chondromyces apiculatus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative cytochrome P450 hydroxylase
Gene (Uniprot):CAP_4855
Chain IDs:A
Chain Length:397
Number of Molecules:1
Biological Source:Chondromyces apiculatus DSM 436
Ligand Molecules
Primary Citation
Characterization and structure-guided engineering of the novel versatile terpene monooxygenase CYP109Q5 from Chondromyces apiculatus DSM436.
Microb Biotechnol 12 377 391 (2019)
PMID: 30592153 DOI: 10.1111/1751-7915.13354

Abstact

One of the major challenges in chemical synthesis is the selective oxyfunctionalization of non-activated C-H bonds, which can be enabled by biocatalysis using cytochrome P450 monooxygenases. In this study, we report on the characterization of the versatile CYP109Q5 from Chondromyces apiculatus DSM436, which is able to functionalize a wide range of substrates (terpenes, steroids and drugs), including the ring of β-ionone in non-allylic positions. The crystal structure of CYP109Q5 revealed flexibility within the active site pocket that permitted the accommodation of bulky substrates, and enabled a structure-guided approach to engineering the enzyme. Some variants of CYP109Q5 displayed a switch in selectivity towards the non-allylic positions of β-ionone, allowing the simultaneous production of 2- and 3-hydroxy-β-ionone, which are chemically challenging to synthesize and are important precursors for carotenoid synthesis. An efficient whole-cell system finally enabled the production of up to 0.5 g l-1 hydroxylated products of β-ionone; this system can be applied to product identification in further biotransformations. Overall, CYP109Q5 proved to be highly evolvable and active. The studies in this work demonstrate that, using rational mutagenesis, the highly versatile CYP109Q5 generalist can be progressively evolved to be an industrially valuable specialist for the synthesis of specific products.

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Chemical

Disease

Primary Citation of related structures