6GJQ image
Entry Detail
PDB ID:
6GJQ
Keywords:
Title:
human NBD1 of CFTR in complex with nanobody T27
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-05-16
Release Date:
2019-06-19
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cystic fibrosis transmembrane conductance regulator
Mutations:S492P, A534P, I539T
Chain IDs:A, C, E, G
Chain Length:261
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nanobody T27
Chain IDs:B, D, F, H
Chain Length:147
Number of Molecules:4
Biological Source:Lama glama
Ligand Molecules
Primary Citation
Domain-interface dynamics of CFTR revealed by stabilizing nanobodies.
Nat Commun 10 2636 2636 (2019)
PMID: 31201318 DOI: 10.1038/s41467-019-10714-y

Abstact

The leading cause of cystic fibrosis (CF) is the deletion of phenylalanine 508 (F508del) in the first nucleotide-binding domain (NBD1) of the cystic fibrosis transmembrane conductance regulator (CFTR). The mutation affects the thermodynamic stability of the domain and the integrity of the interface between NBD1 and the transmembrane domain leading to its clearance by the quality control system. Here, we develop nanobodies targeting NBD1 of human CFTR and demonstrate their ability to stabilize both isolated NBD1 and full-length protein. Crystal structures of NBD1-nanobody complexes provide an atomic description of the epitopes and reveal the molecular basis for stabilization. Furthermore, our data uncover a conformation of CFTR, involving detachment of NBD1 from the transmembrane domain, which contrast with the compact assembly observed in cryo-EM structures. This unexpected interface rearrangement is likely to have major relevance for CF pathogenesis but also for the normal function of CFTR and other ABC proteins.

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Primary Citation of related structures