6GFJ image
Entry Detail
PDB ID:
6GFJ
Keywords:
Title:
Structure of RIP2 CARD domain fused to crystallisable MBP tag
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2018-04-30
Release Date:
2019-03-13
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Sugar ABC transporter substrate-binding protein,Receptor-interacting serine/threonine-protein kinase 2
Chain IDs:A, B, C, D
Chain Length:477
Number of Molecules:4
Biological Source:Methanosarcina mazei, Homo sapiens
Ligand Molecules
Peptide-like Molecules
PRD_900001
Primary Citation
RIP2 filament formation is required for NOD2 dependent NF-kappa B signalling.
Nat Commun 9 4043 4043 (2018)
PMID: 30279485 DOI: 10.1038/s41467-018-06451-3

Abstact

Activation of the innate immune pattern recognition receptor NOD2 by the bacterial muramyl-dipeptide peptidoglycan fragment triggers recruitment of the downstream adaptor kinase RIP2, eventually leading to NF-κB activation and proinflammatory cytokine production. Here we show that full-length RIP2 can form long filaments mediated by its caspase recruitment domain (CARD), in common with other innate immune adaptor proteins. We further show that the NOD2 tandem CARDs bind to one end of the RIP2 CARD filament, suggesting a mechanism for polar filament nucleation by activated NOD2. We combine X-ray crystallography, solid-state NMR and high-resolution cryo-electron microscopy to determine the atomic structure of the helical RIP2 CARD filament, which reveals the intermolecular interactions that stabilize the assembly. Using structure-guided mutagenesis, we demonstrate the importance of RIP2 polymerization for the activation of NF-κB signalling by NOD2. Our results could be of use to develop new pharmacological strategies to treat inflammatory diseases characterised by aberrant NOD2 signalling.

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Primary Citation of related structures