6GDA image
Entry Detail
PDB ID:
6GDA
Keywords:
Title:
Cytochrome c in complex with Sulfonato-calix[8]arene, P43212 form soaked with Spermine
Biological Source:
PDB Version:
Deposition Date:
2018-04-23
Release Date:
2019-05-01
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytochrome c iso-1
Mutations:C102T, T-5A
Chain IDs:A
Chain Length:108
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
Tuning Protein Frameworks via Auxiliary Supramolecular Interactions.
Acs Nano 13 10343 10350 (2019)
PMID: 31490058 DOI: 10.1021/acsnano.9b04115

Abstact

Protein crystals with their precise, periodic array of functional building blocks have potential applications in biomaterials, sensing, and catalysis. This paper describes how a highly porous crystalline framework of a cationic redox protein and an anionic macrocycle can be modulated by a small cationic effector. Ternary composites of protein (∼13 kDa), calix[8]arene (∼1.5 kDa), and effector (∼0.2 kDa) formed distinct crystalline architectures, dependent on the effector concentration and the crystallization technique. A combination of X-ray crystallography and density functional theory (DFT) calculations was used to decipher the framework variations, which appear to be dependent on a calixarene conformation change mediated by the effector. This "switch" calixarene was observed in three states, each of which is associated with a different interaction network. Two structures obtained by co-crystallization with the effector contained an additional protein "pillar", resulting in framework duplication and decreased porosity. These results suggest how protein assembly can be engineered by supramolecular host-guest interactions.

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