6GD7 image
Entry Detail
PDB ID:
6GD7
Keywords:
Title:
Cytochrome c in complex with Sulfonato-calix[8]arene, H3 form with PEG
Biological Source:
PDB Version:
Deposition Date:
2018-04-23
Release Date:
2018-08-29
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytochrome c iso-1
Mutations:C102T, T-5A
Chain IDs:A
Chain Length:108
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
Auto-regulated Protein Assembly on a Supramolecular Scaffold.
Angew. Chem. Int. Ed. Engl. 57 13764 13769 (2018)
PMID: 30109907 DOI: 10.1002/anie.201807490

Abstact

Controlled protein assembly provides a means to regulate function. Supramolecular building blocks, including rigid macrocycles, are versatile triggers of protein assembly. Now it is shown that sulfonato-calix[8]arene (sclx8) mediates the formation of cytochrome c tetramers in solution. This tetramer spontaneously disassembles at ≥2 equivalents of sclx8 , providing a remarkable example of auto-regulation. Using X-ray crystallography the sclx8 binding sites on cytochrome c were characterized. Crystal structures at different protein-ligand ratios reveal varying degrees (up to 35 %) of protein surface coverage by the flexible calixarene and suggest a mechanism for oligomer disassembly. The solution structure of the oligomer was characterized by small-angle X-ray scattering. Overall, the data indicate calixarene-controlled protein assembly and disassembly without the requirement for a competitive inhibitor, and point to protein encapsulation by a flexible macrocycle.

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