6GD5 image
Deposition Date 2018-04-22
Release Date 2018-11-28
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6GD5
Keywords:
Title:
The solution structure of the LptA-Thanatin complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lipopolysaccharide export system protein LptA
Gene (Uniprot):lptA
Chain IDs:A
Chain Length:117
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Molecule:Thanatin
Chain IDs:B
Chain Length:21
Number of Molecules:1
Biological Source:Podisus maculiventris
Ligand Molecules
Primary Citation
Thanatin targets the intermembrane protein complex required for lipopolysaccharide transport inEscherichia coli.
Sci Adv 4 eaau2634 eaau2634 (2018)
PMID: 30443594 DOI: 10.1126/sciadv.aau2634

Abstact

With the increasing resistance of many Gram-negative bacteria to existing classes of antibiotics, identifying new paradigms in antimicrobial discovery is an important research priority. Of special interest are the proteins required for the biogenesis of the asymmetric Gram-negative bacterial outer membrane (OM). Seven Lpt proteins (LptA to LptG) associate in most Gram-negative bacteria to form a macromolecular complex spanning the entire envelope, which transports lipopolysaccharide (LPS) molecules from their site of assembly at the inner membrane to the cell surface, powered by adenosine 5'-triphosphate hydrolysis in the cytoplasm. The periplasmic protein LptA comprises the protein bridge across the periplasm, which connects LptB2FGC at the inner membrane to LptD/E anchored in the OM. We show here that the naturally occurring, insect-derived antimicrobial peptide thanatin targets LptA and LptD in the network of periplasmic protein-protein interactions required to assemble the Lpt complex, leading to the inhibition of LPS transport and OM biogenesis in Escherichia coli.

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Primary Citation of related structures