6GBZ image
Entry Detail
PDB ID:
6GBZ
EMDB ID:
Keywords:
Title:
50S ribosomal subunit assembly intermediate state 5
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-04-16
Release Date:
2018-06-20
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:X (auth: 0)
Chain Length:56
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L33
Chain IDs:Y (auth: 1)
Chain Length:50
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:Z (auth: 2)
Chain Length:46
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:AA (auth: 3)
Chain Length:64
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polyribonucleotide
Description:23S ribosomal RNA
Chain IDs:A
Chain Length:2904
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polyribonucleotide
Description:5S ribosomal RNA
Chain IDs:BA (auth: B)
Chain Length:119
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:B (auth: C)
Chain Length:271
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L3
Chain IDs:C (auth: D)
Chain Length:209
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:D (auth: E)
Chain Length:201
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L5
Chain IDs:E (auth: F)
Chain Length:177
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L6
Chain IDs:F (auth: G)
Chain Length:176
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L9
Chain IDs:G (auth: H)
Chain Length:50
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:H (auth: J)
Chain Length:142
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L14
Chain IDs:I (auth: K)
Chain Length:122
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:J (auth: L)
Chain Length:143
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:CA (auth: M)
Chain Length:136
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:K (auth: N)
Chain Length:120
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:L (auth: O)
Chain Length:116
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:M (auth: P)
Chain Length:114
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:N (auth: Q)
Chain Length:117
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L21
Chain IDs:O (auth: R)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:P (auth: S)
Chain Length:110
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:Q (auth: T)
Chain Length:93
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L24
Chain IDs:R (auth: U)
Chain Length:102
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:S (auth: V)
Chain Length:94
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L27
Chain IDs:T (auth: W)
Chain Length:76
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L28
Chain IDs:U (auth: X)
Chain Length:77
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L29
Chain IDs:V (auth: Y)
Chain Length:63
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:W (auth: Z)
Chain Length:58
Number of Molecules:1
Biological Source:Escherichia coli K-12
Ligand Molecules
Primary Citation
Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit during In Vitro Reconstitution.
Mol. Cell 70 881 893.e3 (2018)
PMID: 29883607 DOI: 10.1016/j.molcel.2018.05.003

Abstact

The assembly of ribosomal subunits is an essential prerequisite for protein biosynthesis in all domains of life. Although biochemical and biophysical approaches have advanced our understanding of ribosome assembly, our mechanistic comprehension of this process is still limited. Here, we perform an in vitro reconstitution of the Escherichia coli 50S ribosomal subunit. Late reconstitution products were subjected to high-resolution cryo-electron microscopy and multiparticle refinement analysis to reconstruct five distinct precursors of the 50S subunit with 4.3-3.8 Å resolution. These assembly intermediates define a progressive maturation pathway culminating in a late assembly particle, whose structure is more than 96% identical to a mature 50S subunit. Our structures monitor the formation and stabilization of structural elements in a nascent particle in unprecedented detail and identify the maturation of the rRNA-based peptidyl transferase center as the final critical step along the 50S assembly pathway.

Legend

Protein

Chemical

Disease

Primary Citation of related structures