6G50 image
Entry Detail
PDB ID:
6G50
Keywords:
Title:
The structure of thiocyanate dehydrogenase from Thioalkalivibrio paradoxus as isolated.
Biological Source:
PDB Version:
Deposition Date:
2018-03-28
Release Date:
2019-04-10
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.20
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Uncharacterized protein
Chain IDs:A, B, C, D
Chain Length:467
Number of Molecules:4
Biological Source:Thioalkalivibrio paradoxus ARh 1
Primary Citation
Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase.
Proc.Natl.Acad.Sci.USA 117 5280 5290 (2020)
PMID: 32094184 DOI: 10.1073/pnas.1922133117

Abstact

Biocatalytic copper centers are generally involved in the activation and reduction of dioxygen, with only few exceptions known. Here we report the discovery and characterization of a previously undescribed copper center that forms the active site of a copper-containing enzyme thiocyanate dehydrogenase (suggested EC 1.8.2.7) that was purified from the haloalkaliphilic sulfur-oxidizing bacterium of the genus Thioalkalivibrio ubiquitous in saline alkaline soda lakes. The copper cluster is formed by three copper ions located at the corners of a near-isosceles triangle and facilitates a direct thiocyanate conversion into cyanate, elemental sulfur, and two reducing equivalents without involvement of molecular oxygen. A molecular mechanism of catalysis is suggested based on high-resolution three-dimensional structures, electron paramagnetic resonance (EPR) spectroscopy, quantum mechanics/molecular mechanics (QM/MM) simulations, kinetic studies, and the results of site-directed mutagenesis.

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