6FY9 image
Entry Detail
PDB ID:
6FY9
Keywords:
Title:
The crystal structure of EncM complex with xenon under 15 bars Xe pressure
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-03-11
Release Date:
2018-05-02
Method Details:
Experimental Method:
Resolution:
3.65 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Putative FAD-dependent oxygenase EncM
Chain IDs:A
Chain Length:464
Number of Molecules:1
Biological Source:Streptomyces maritimus
Primary Citation
Enzymatic control of dioxygen binding and functionalization of the flavin cofactor.
Proc. Natl. Acad. Sci. U.S.A. 115 4909 4914 (2018)
PMID: 29686059 DOI: 10.1073/pnas.1801189115

Abstact

The reactions of enzymes and cofactors with gaseous molecules such as dioxygen (O2) are challenging to study and remain among the most contentious subjects in biochemistry. To date, it is largely enigmatic how enzymes control and fine-tune their reactions with O2, as exemplified by the ubiquitous flavin-dependent enzymes that commonly facilitate redox chemistry such as the oxygenation of organic substrates. Here we employ O2-pressurized X-ray crystallography and quantum mechanical calculations to reveal how the precise positioning of O2 within a flavoenzyme's active site enables the regiospecific formation of a covalent flavin-oxygen adduct and oxygenating species (i.e., the flavin-N5-oxide) by mimicking a critical transition state. This study unambiguously demonstrates how enzymes may control the O2 functionalization of an organic cofactor as prerequisite for oxidative catalysis. Our work thus illustrates how O2 reactivity can be harnessed in an enzymatic environment and provides crucial knowledge for future rational design of O2-reactive enzymes.

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