6FY2 image
Entry Detail
PDB ID:
6FY2
Keywords:
Title:
Crystal structure of a V2p-reactive RV144 vaccine-like antibody, CAP228-16H, in complex with a heterologous CAP225 V1V2
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2018-03-10
Release Date:
2018-09-05
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:CAP228-16H Heavy Chain
Chain IDs:A (auth: H), D (auth: X)
Chain Length:235
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CAP228-16H Light Chain
Chain IDs:B (auth: L), E (auth: Y)
Chain Length:213
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CAP225 Scaffolded V1V2
Chain IDs:C (auth: P), F (auth: Z)
Chain Length:137
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Primary Citation
Common helical V1V2 conformations of HIV-1 Envelope expose the alpha 4 beta 7 binding site on intact virions.
Nat Commun 9 4489 4489 (2018)
PMID: 30367034 DOI: 10.1038/s41467-018-06794-x

Abstact

The α4β7 integrin is a non-essential HIV-1 adhesion receptor, bound by the gp120 V1V2 domain, facilitating rapid viral dissemination into gut-associated lymphoid tissues. Antibodies blocking this interaction early in infection can improve disease outcome, and V1V2-targeted antibodies were correlated with moderate efficacy reported from the RV144 HIV-1 vaccine trial. Monoclonal α4β7-blocking antibodies recognise two slightly different helical V2 conformations, and current structural data suggests their binding sites are occluded in prefusion envelope trimers. Here, we report cocrystal structures of two α4β7-blocking antibodies from an infected donor complexed with scaffolded V1V2 or V2 peptides. Both antibodies recognised the same helix-coil V2 conformation as RV144 antibody CH58, identifying a frequently sampled alternative conformation of full-length V1V2. In the context of Envelope, this α-helical form of V1V2 displays highly exposed α4β7-binding sites, potentially providing a functional role for non-native Envelope on virion or infected cell surfaces in HIV-1 dissemination, pathogenesis, and vaccine design.

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