6FX2 image
Entry Detail
PDB ID:
6FX2
Title:
crystal structure of Pholiota squarrosa lectin in complex with a decasaccharide
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-03-08
Release Date:
2018-07-11
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
I 21 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:lectin
Chain IDs:A, B
Chain Length:43
Number of Molecules:2
Biological Source:Pholiota squarrosa
Primary Citation
Recognition of Complex Core-Fucosylated N-Glycans by a Mini Lectin.
Angew. Chem. Int. Ed. Engl. 57 10178 10181 (2018)
PMID: 29956878 DOI: 10.1002/anie.201805165

Abstact

The mini fungal lectin PhoSL was recombinantly produced and characterized. Despite a length of only 40 amino acids, PhoSL exclusively recognizes N-glycans with α1,6-linked fucose. Core fucosylation influences the intrinsic properties and bioactivities of mammalian N-glycoproteins and its level is linked to various cancers. Thus, PhoSL serves as a promising tool for glycoprofiling. Without structural precedence, the crystal structure was solved using the zinc anomalous signal, and revealed an interlaced trimer creating a novel protein fold termed β-prism III. Three biantennary core-fucosylated N-glycan azides of 8 to 12 sugars were cocrystallized with PhoSL. The resulting highly resolved structures gave a detailed view on how the exclusive recognition of α1,6-fucosylated N-glycans by such a small protein occurs. This work also provided a protein consensus motif for the observed specificity as well as a glimpse into N-glycan flexibility upon binding.

Legend

Protein

Chemical

Disease

Primary Citation of related structures