6FX1 image
Deposition Date 2018-03-08
Release Date 2018-07-11
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6FX1
Title:
Crystal structure of Pholiota squarrosa lectin in complex with an octasaccharide
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:lectin
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:43
Number of Molecules:12
Biological Source:Pholiota squarrosa
Primary Citation
Recognition of Complex Core-Fucosylated N-Glycans by a Mini Lectin.
Angew. Chem. Int. Ed. Engl. 57 10178 10181 (2018)
PMID: 29956878 DOI: 10.1002/anie.201805165

Abstact

The mini fungal lectin PhoSL was recombinantly produced and characterized. Despite a length of only 40 amino acids, PhoSL exclusively recognizes N-glycans with α1,6-linked fucose. Core fucosylation influences the intrinsic properties and bioactivities of mammalian N-glycoproteins and its level is linked to various cancers. Thus, PhoSL serves as a promising tool for glycoprofiling. Without structural precedence, the crystal structure was solved using the zinc anomalous signal, and revealed an interlaced trimer creating a novel protein fold termed β-prism III. Three biantennary core-fucosylated N-glycan azides of 8 to 12 sugars were cocrystallized with PhoSL. The resulting highly resolved structures gave a detailed view on how the exclusive recognition of α1,6-fucosylated N-glycans by such a small protein occurs. This work also provided a protein consensus motif for the observed specificity as well as a glimpse into N-glycan flexibility upon binding.

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Primary Citation of related structures