6FWN image
Deposition Date 2018-03-06
Release Date 2018-10-24
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6FWN
Keywords:
Title:
Structure and dynamics of the platelet integrin-binding C4 domain of von Willebrand factor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Conformers Calculated:
20
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:von Willebrand factor
Gene (Uniprot):VWF
Chain IDs:A
Chain Length:85
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure and dynamics of the platelet integrin-binding C4 domain of von Willebrand factor.
Blood 133 366 376 (2019)
PMID: 30305279 DOI: 10.1182/blood-2018-04-843615

Abstact

Von Willebrand factor (VWF) is a key player in the regulation of hemostasis by promoting recruitment of platelets to sites of vascular injury. An array of 6 C domains forms the dimeric C-terminal VWF stem. Upon shear force activation, the stem adopts an open conformation allowing the adhesion of VWF to platelets and the vessel wall. To understand the underlying molecular mechanism and associated functional perturbations in disease-related variants, knowledge of high-resolution structures and dynamics of C domains is of paramount interest. Here, we present the solution structure of the VWF C4 domain, which binds to the platelet integrin and is therefore crucial for the VWF function. In the structure, we observed 5 intra- and inter-subdomain disulfide bridges, of which 1 is unique in the C4 domain. The structure further revealed an unusually hinged 2-subdomain arrangement. The hinge is confined to a very short segment around V2547 connecting the 2 subdomains. Together with 2 nearby inter-subdomain disulfide bridges, this hinge induces slow conformational changes and positional alternations of both subdomains with respect to each other. Furthermore, the structure demonstrates that a clinical gain-of-function VWF variant (Y2561) is more likely to have an effect on the arrangement of the C4 domain with neighboring domains rather than impairing platelet integrin binding.

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Primary Citation of related structures
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