ISDA: 6FUW

Deposition Date 2018-02-28

Release Date 2018-03-21

Last Version Date 2024-07-10

Entry Detail

PDB ID:

6FUW

Keywords:

RNA BINDING PROTEIN

Title:

Cryo-EM structure of the human CPSF160-WDR33-CPSF30 complex bound to the PAS AAUAAA motif at 3.1 Angstrom resolution

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)
unidentified adenovirus (Taxon ID: 10535)

Expression System(s):

Spodoptera aff. frugiperda 2 rz-2014

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.07 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cleavage and polyadenylation specificity factor subunit 1
Gene (Uniprot):CPSF1
Chain IDs:A
Chain Length:1446
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q10570 Pfam ID:PF10433, PF03178, PF23726

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:pre-mRNA 3' end processing protein WDR33
Gene (Uniprot):WDR33
Chain IDs:B
Chain Length:413
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9C0J8 Pfam ID:PF00400

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cleavage and polyadenylation specificity factor subunit 4
Gene (Uniprot):CPSF4
Chain IDs:C
Chain Length:178
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O95639 Pfam ID:PF15663, PF00642

Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*AP*AP*UP*AP*AP*AP*GP*G)-3')
Chain IDs:D
Chain Length:10
Number of Molecules:1
Biological Source:unidentified adenovirus

Ligand Molecules

Primary Citation

Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex.

Clerici, M, Faini, M, Muckenfuss, L.M, Aebersold, R, Jinek, M.Show

Nat. Struct. Mol. Biol. 25 135 138 (2018)

PMID: 29358758 DOI: 10.1038/s41594-017-0020-6

Abstact

Mammalian mRNA biogenesis requires specific recognition of a hexanucleotide AAUAAA motif in the polyadenylation signals (PAS) of precursor mRNA (pre-mRNA) transcripts by the cleavage and polyadenylation specificity factor (CPSF) complex. Here we present a 3.1-Å-resolution cryo-EM structure of a core CPSF module bound to the PAS hexamer motif. The structure reveals the molecular interactions responsible for base-specific recognition, providing a rationale for mechanistic differences between mammalian and yeast 3' polyadenylation.

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Primary Citation of related structures

Abstact

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