6FU5 image
Entry Detail
PDB ID:
6FU5
Keywords:
Title:
Structure of the kinase domain of human RIPK2 in complex with the inhibitor CSLP18
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-02-26
Release Date:
2018-04-25
Method Details:
Experimental Method:
Resolution:
3.26 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Receptor-interacting serine/threonine-protein kinase 2
Chain IDs:A, B
Chain Length:317
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Small molecule inhibitors reveal an indispensable scaffolding role of RIPK2 in NOD2 signaling.
EMBO J. 37 ? ? (2018)
PMID: 30026309 DOI: 10.15252/embj.201899372

Abstact

RIPK2 mediates inflammatory signaling by the bacteria-sensing receptors NOD1 and NOD2. Kinase inhibitors targeting RIPK2 are a proposed strategy to ameliorate NOD-mediated pathologies. Here, we reveal that RIPK2 kinase activity is dispensable for NOD2 inflammatory signaling and show that RIPK2 inhibitors function instead by antagonizing XIAP-binding and XIAP-mediated ubiquitination of RIPK2. We map the XIAP binding site on RIPK2 to the loop between β2 and β3 of the N-lobe of the kinase, which is in close proximity to the ATP-binding pocket. Through characterization of a new series of ATP pocket-binding RIPK2 inhibitors, we identify the molecular features that determine their inhibition of both the RIPK2-XIAP interaction, and of cellular and in vivoNOD2 signaling. Our study exemplifies how targeting of the ATP-binding pocket in RIPK2 can be exploited to interfere with the RIPK2-XIAP interaction for modulation of NOD signaling.

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Primary Citation of related structures