6FTI image
Entry Detail
PDB ID:
6FTI
EMDB ID:
Title:
Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
Biological Source:
PDB Version:
Deposition Date:
2018-02-22
Release Date:
2018-03-21
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Unidentified TM
Chain IDs:HB (auth: 0)
Chain Length:24
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1
Chain IDs:ZA (auth: 1)
Chain Length:162
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:TMEM258
Chain IDs:AB (auth: 2)
Chain Length:60
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:Oligosaccharyltransferase complex subunit OSTC
Chain IDs:BB (auth: 3)
Chain Length:120
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4
Chain IDs:CB (auth: 4)
Chain Length:34
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Chain IDs:DB (auth: 5)
Chain Length:705
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:DAD1
Chain IDs:EB (auth: 6)
Chain Length:109
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:OST48
Chain IDs:FB (auth: 7)
Chain Length:25
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:RPN1
Chain IDs:GB (auth: 8)
Chain Length:80
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:uL2
Chain IDs:A
Chain Length:244
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL3
Chain IDs:B
Chain Length:75
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L4
Chain IDs:C
Chain Length:362
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L5
Chain IDs:D
Chain Length:107
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L6
Chain IDs:E
Chain Length:248
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL30
Chain IDs:F
Chain Length:109
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL8
Chain IDs:G
Chain Length:241
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL6
Chain IDs:H
Chain Length:190
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L10 (Predicted)
Chain IDs:I
Chain Length:102
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L11
Chain IDs:J
Chain Length:169
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL13
Chain IDs:K (auth: L)
Chain Length:50
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L14
Chain IDs:L (auth: M)
Chain Length:138
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L15
Chain IDs:M (auth: N)
Chain Length:203
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL13
Chain IDs:N (auth: O)
Chain Length:199
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL22
Chain IDs:O (auth: P)
Chain Length:153
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL14
Chain IDs:P (auth: Q)
Chain Length:187
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL19
Chain IDs:Q (auth: R)
Chain Length:180
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL20
Chain IDs:R (auth: S)
Chain Length:198
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL21
Chain IDs:S (auth: T)
Chain Length:159
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL22
Chain IDs:T (auth: U)
Chain Length:99
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL14
Chain IDs:U (auth: V)
Chain Length:131
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L24
Chain IDs:V (auth: W)
Chain Length:63
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL23
Chain IDs:W (auth: X)
Chain Length:461
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L26
Chain IDs:X (auth: Y)
Chain Length:134
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27
Chain IDs:Y (auth: Z)
Chain Length:29
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL15
Chain IDs:Z (auth: a)
Chain Length:244
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L29
Chain IDs:AA (auth: b)
Chain Length:75
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL30
Chain IDs:BA (auth: c)
Chain Length:362
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL31
Chain IDs:CA (auth: d)
Chain Length:107
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL32
Chain IDs:DA (auth: e)
Chain Length:248
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL33
Chain IDs:EA (auth: f)
Chain Length:109
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL34
Chain IDs:FA (auth: g)
Chain Length:241
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:uL29
Chain IDs:GA (auth: h)
Chain Length:190
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36
Chain IDs:HA (auth: i)
Chain Length:102
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L37
Chain IDs:IA (auth: j)
Chain Length:169
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL38
Chain IDs:JA (auth: k)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL39
Chain IDs:KA (auth: l)
Chain Length:50
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL40
Chain IDs:LA (auth: m)
Chain Length:138
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60s ribosomal protein l41
Chain IDs:MA (auth: n)
Chain Length:203
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL42
Chain IDs:NA (auth: o)
Chain Length:199
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L37a
Chain IDs:OA (auth: p)
Chain Length:153
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Description:p-Site tRNA
Chain IDs:SA (auth: q)
Chain Length:187
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:eL28
Chain IDs:PA (auth: r)
Chain Length:180
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:60S acidic ribosomal protein P0
Chain IDs:QA (auth: s)
Chain Length:198
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ribosomal protein L12
Chain IDs:RA (auth: t)
Chain Length:159
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Description:28S rRNA
Chain IDs:TA (auth: u)
Chain Length:99
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Description:5S ribosomal RNA
Chain IDs:UA (auth: v)
Chain Length:131
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Description:5.8S ribosomal RNA
Chain IDs:VA (auth: w)
Chain Length:63
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Protein transport protein Sec61 subunit alpha isoform 1
Chain IDs:WA (auth: x)
Chain Length:461
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:Protein transport protein Sec61 subunit gamma
Chain IDs:XA (auth: y)
Chain Length:134
Number of Molecules:1
Biological Source:Canis lupus familiaris
Polymer Type:polypeptide(L)
Description:Protein transport protein Sec61 subunit beta
Chain IDs:YA (auth: z)
Chain Length:29
Number of Molecules:1
Biological Source:Canis lupus familiaris
Primary Citation
Structural basis for coupling protein transport and N-glycosylation at the mammalian endoplasmic reticulum.
Science 360 215 219 (2018)
PMID: 29519914 DOI: 10.1126/science.aar7899

Abstact

Protein synthesis, transport, and N-glycosylation are coupled at the mammalian endoplasmic reticulum by complex formation of a ribosome, the Sec61 protein-conducting channel, and oligosaccharyltransferase (OST). Here we used different cryo-electron microscopy approaches to determine structures of native and solubilized ribosome-Sec61-OST complexes. A molecular model for the catalytic OST subunit STT3A (staurosporine and temperature sensitive 3A) revealed how it is integrated into the OST and how STT3-paralog specificity for translocon-associated OST is achieved. The OST subunit DC2 was placed at the interface between Sec61 and STT3A, where it acts as a versatile module for recruitment of STT3A-containing OST to the ribosome-Sec61 complex. This detailed structural view on the molecular architecture of the cotranslational machinery for N-glycosylation provides the basis for a mechanistic understanding of glycoprotein biogenesis at the endoplasmic reticulum.

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Primary Citation of related structures