6FOO image
Deposition Date 2018-02-08
Release Date 2018-08-08
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6FOO
Title:
Structure of Ryanodine Receptor 1 in nanodiscs in the presence of calcium and ATP
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
8.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ryanodine receptor 1
Gene (Uniprot):RYR1
Chain IDs:A, B, C, D
Chain Length:5037
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Ligand Molecules
Primary Citation
Influence of Lipid Mimetics on Gating of Ryanodine Receptor.
Structure 26 1303 1313.e4 (2018)
PMID: 30078641 DOI: 10.1016/j.str.2018.06.010

Abstact

Understanding gating principles of ion channels at high resolution is of great importance. Here we investigate the conformational transition from closed to open state in ryanodine receptor 1 (RyR1) reconstituted into lipid nanodiscs. RyR1 is a homotetrameric giant ion channel that couples excitation of muscle cells to fast calcium release from the sarcoplasmic reticulum. Using single-particle cryo-EM we show that RyR1 reconstituted into lipid nanodiscs is stabilized in the open conformation when bound to the plant toxin ryanodine, but not in the presence of its physiological activators, calcium and ATP. Further, using ryanodine binding assays we show that membrane mimetics influence RyR1 transition between closed and open-channel conformations. We find that all detergents, including fluorinated detergents added to nanodiscs, stabilize closed state of RyR1. Our biochemical results correlate with available structural data and suggest optimal conditions for structural studies of RyR1 gating.

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