6FNZ image
Deposition Date 2018-02-05
Release Date 2018-04-04
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6FNZ
Title:
Crystal Structure of domain-swapped C-terminal domain of human doublecortin
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
unidentified (Taxon ID: 32644)
Method Details:
Experimental Method:
Resolution:
2.23 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Neuronal migration protein doublecortin
Gene (Uniprot):DCX
Chain IDs:A, B, C, D
Chain Length:81
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:possible peptide
Chain IDs:E, F, G
Chain Length:6
Number of Molecules:3
Biological Source:unidentified
Primary Citation
Domain swap in the C-terminal ubiquitin-like domain of human doublecortin.
Acta Crystallogr D Struct Biol 74 450 462 (2018)
PMID: 29717716 DOI: 10.1107/S2059798318004813

Abstact

Doublecortin, a microtubule-associated protein that is only produced during neurogenesis, cooperatively binds to microtubules and stimulates microtubule polymerization and cross-linking by unknown mechanisms. A domain swap is observed in the crystal structure of the C-terminal domain of doublecortin. As determined by analytical ultracentrifugation, an open conformation is also present in solution. At higher concentrations, higher-order oligomers of the domain are formed. The domain swap and additional interfaces observed in the crystal lattice can explain the formation of doublecortin tetramers or multimers, in line with the analytical ultracentrifugation data. Taken together, the domain swap offers a mechanism for the observed cooperative binding of doublecortin to microtubules. Doublecortin-induced cross-linking of microtubules can be explained by the same mechanism. The effect of several mutations leading to lissencephaly and double-cortex syndrome can be traced to the domain swap and the proposed self-association of doublecortin.

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