6FNP image
Entry Detail
PDB ID:
6FNP
Title:
Crystal structure of ECF-CbrT, a cobalamin transporter
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-02-05
Release Date:
2018-07-25
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Membrane protein
Chain IDs:A, E
Chain Length:182
Number of Molecules:2
Biological Source:Lactobacillus delbrueckii
Polymer Type:polypeptide(L)
Description:Energy-coupling factor transporter ATP-binding protein EcfA1
Chain IDs:B, F
Chain Length:300
Number of Molecules:2
Biological Source:Lactobacillus delbrueckii
Polymer Type:polypeptide(L)
Description:Energy-coupling factor transporter ATP-binding protein EcfA2
Chain IDs:C, G
Chain Length:287
Number of Molecules:2
Biological Source:Lactobacillus delbrueckii
Polymer Type:polypeptide(L)
Description:Energy-coupling factor transporter transmembrane protein EcfT
Chain IDs:D, H
Chain Length:265
Number of Molecules:2
Biological Source:Lactobacillus delbrueckii
Ligand Molecules
Primary Citation
Functional and structural characterization of an ECF-type ABC transporter for vitamin B12.
Elife 7 ? ? (2018)
PMID: 29809140 DOI: 10.7554/eLife.35828

Abstact

Vitamin B12 (cobalamin) is the most complex B-type vitamin and is synthetized exclusively in a limited number of prokaryotes. Its biologically active variants contain rare organometallic bonds, which are used by enzymes in a variety of central metabolic pathways such as L-methionine synthesis and ribonucleotide reduction. Although its biosynthesis and role as co-factor are well understood, knowledge about uptake of cobalamin by prokaryotic auxotrophs is scarce. Here, we characterize a cobalamin-specific ECF-type ABC transporter from Lactobacillus delbrueckii, ECF-CbrT, and demonstrate that it mediates the specific, ATP-dependent uptake of cobalamin. We solved the crystal structure of ECF-CbrT in an apo conformation to 3.4 Å resolution. Comparison with the ECF transporter for folate (ECF-FolT2) from the same organism, reveals how the identical ECF module adjusts to interact with the different substrate binding proteins FolT2 and CbrT. ECF-CbrT is unrelated to the well-characterized B12 transporter BtuCDF, but their biochemical features indicate functional convergence.

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Primary Citation of related structures