6FND image
Deposition Date 2018-02-02
Release Date 2018-11-14
Last Version Date 2025-04-09
Entry Detail
PDB ID:
6FND
Keywords:
Title:
Crystal structure of Toxoplasma gondii AKMT
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Apical complex lysine methyltransferase
Chain IDs:A
Chain Length:423
Number of Molecules:1
Biological Source:Toxoplasma gondii
Polymer Type:polypeptide(L)
Molecule:Apical complex lysine methyltransferase
Chain IDs:B
Chain Length:418
Number of Molecules:1
Biological Source:Toxoplasma gondii TgCatPRC2
Polymer Type:polypeptide(L)
Molecule:Apical complex lysine methyltransferase
Chain IDs:C
Chain Length:424
Number of Molecules:1
Biological Source:Toxoplasma gondii TgCatPRC2
Polymer Type:polypeptide(L)
Molecule:Apical complex lysine methyltransferase
Chain IDs:D
Chain Length:425
Number of Molecules:1
Biological Source:Toxoplasma gondii TgCatPRC2
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLY A LYS modified residue
MLZ A LYS modified residue
Primary Citation
Structure of a Novel Dimeric SET Domain Methyltransferase that Regulates Cell Motility.
J. Mol. Biol. 430 4209 4229 (2018)
PMID: 30148980 DOI: 10.1016/j.jmb.2018.08.017

Abstact

Lysine methyltransferases (KMTs) were initially associated with transcriptional control through their methylation of histones and other nuclear proteins, but have since been found to regulate many other cellular activities. The apical complex lysine (K) methyltransferase (AKMT) of the human parasite Toxoplasma gondii was recently shown to play a critical role in regulating cellular motility. Here we report a 2.1-Å resolution crystal structure of the conserved and functional C-terminal portion (aa289-709) of T. gondii AKMT. AKMT dimerizes via a unique intermolecular interface mediated by the C-terminal tetratricopeptide repeat-like domain together with a specific zinc-binding motif that is absent from all other KMTs. Disruption of AKMT dimerization impaired both its enzyme activity and parasite egress from infected host cells in vivo. Structural comparisons reveal that AKMT is related to the KMTs in the SMYD family, with, however, a number of distinct structural features in addition to the unusual dimerization interface. These features are conserved among the apicomplexan parasites and their free-living relatives, but not found in any known KMTs in animals. AKMT therefore is the founding member of a new subclass of KMT that has important implications for the evolution of the apicomplexans.

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Primary Citation of related structures