6FM9 image
Entry Detail
PDB ID:
6FM9
Keywords:
Title:
Crystal structure of human UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-01-30
Release Date:
2018-02-28
Method Details:
Experimental Method:
Resolution:
3.60 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
Chain IDs:A
Chain Length:409
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

Protein N-glycosylation is a widespread post-translational modification. The first committed step in this process is catalysed by dolichyl-phosphate N-acetylglucosamine-phosphotransferase DPAGT1 (GPT/E.C. 2.7.8.15). Missense DPAGT1 variants cause congenital myasthenic syndrome and disorders of glycosylation. In addition, naturally-occurring bactericidal nucleoside analogues such as tunicamycin are toxic to eukaryotes due to DPAGT1 inhibition, preventing their clinical use. Our structures of DPAGT1 with the substrate UDP-GlcNAc and tunicamycin reveal substrate binding modes, suggest a mechanism of catalysis, provide an understanding of how mutations modulate activity (thus causing disease) and allow design of non-toxic "lipid-altered" tunicamycins. The structure-tuned activity of these analogues against several bacterial targets allowed the design of potent antibiotics for Mycobacterium tuberculosis, enabling treatment in vitro, in cellulo and in vivo, providing a promising new class of antimicrobial drug.

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Primary Citation of related structures