6FM6 image
Deposition Date 2018-01-30
Release Date 2018-05-30
Last Version Date 2024-01-17
Entry Detail
PDB ID:
6FM6
Keywords:
Title:
Crystal structure of the class C beta-lactamase TRU-1 from Aeromonas enteropelogenes
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.05 Å
R-Value Free:
0.12
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-lactamase
Chain IDs:A
Chain Length:382
Number of Molecules:1
Biological Source:Aeromonas enteropelogenes
Primary Citation
Atomic-Resolution Structure of a Class C beta-Lactamase and Its Complex with Avibactam.
ChemMedChem 13 1437 1446 (2018)
PMID: 29786960 DOI: 10.1002/cmdc.201800213

Abstact

β-Lactamases (BLs) are important antibiotic-resistance determinants that significantly compromise the efficacy of valuable β-lactam antibacterial drugs. Thus, combinations with BL inhibitor were developed. Avibactam is the first non-β-lactam BL inhibitor introduced into clinical practice. Ceftazidime-avibactam represents one of the few last-resort antibiotics available for the treatment of infections caused by near-pandrug-resistant bacteria. TRU-1 is a chromosomally encoded AmpC-type BL of Aeromonas enteropelogenes, related to the FOX-type BLs and constitutes a good model for class C BLs. TRU-1 crystals provided ultrahigh-resolution diffraction data for the native enzyme and for its complex with avibactam. A comparison of the native and avibactam-bound structures revealed new details in the conformations of residues relevant for substrate and/or inhibitor binding. Furthermore, a comparison of the TRU-1 and Pseudomonas aeruginosa AmpC avibactam-bound structures revealed two inhibitor conformations that were likely to correspond to two different states occurring during inhibitor carbamylation/recyclization.

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Primary Citation of related structures
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