6FLF image
Deposition Date 2018-01-25
Release Date 2019-06-12
Last Version Date 2024-05-08
Entry Detail
PDB ID:
6FLF
Title:
Deoxyguanylosuccinate synthase (DgsS) structure at 1.33 Angstrom resolution.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.33 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Adenylosuccinate synthetase
Gene (Uniprot):purZ
Chain IDs:A
Chain Length:363
Number of Molecules:1
Biological Source:Vibrio phage phiVC8
Primary Citation
A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes.
Science 372 516 520 (2021)
PMID: 33926955 DOI: 10.1126/science.abe6494

Abstact

Cells have two purine pathways that synthesize adenine and guanine ribonucleotides from phosphoribose via inosylate. A chemical hybrid between adenine and guanine, 2-aminoadenine (Z), replaces adenine in the DNA of the cyanobacterial virus S-2L. We show that S-2L and Vibrio phage PhiVC8 encode a third purine pathway catalyzed by PurZ, a distant paralog of succinoadenylate synthase (PurA), the enzyme condensing aspartate and inosylate in the adenine pathway. PurZ condenses aspartate with deoxyguanylate into dSMP (N6-succino-2-amino-2'-deoxyadenylate), which undergoes defumarylation and phosphorylation to give dZTP (2-amino-2'-deoxyadenosine-5'-triphosphate), a substrate for the phage DNA polymerase. Crystallography and phylogenetics analyses indicate a close relationship between phage PurZ and archaeal PurA enzymes. Our work elucidates the biocatalytic innovation that remodeled a DNA building block beyond canonical molecular biology.

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Primary Citation of related structures
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