6FKM image
Entry Detail
PDB ID:
6FKM
Title:
Drosophila Plexin A in complex with Semaphorin 1b
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-01-24
Release Date:
2019-02-06
Method Details:
Experimental Method:
Resolution:
2.96 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Plexin A, isoform A
Chain IDs:A
Chain Length:715
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Description:MIP07328p
Chain IDs:B
Chain Length:578
Number of Molecules:1
Biological Source:Drosophila melanogaster
Ligand Molecules
Primary Citation
Structural basis of semaphorin-plexin cis interaction.
Embo J. ? e102926 e102926 (2020)
PMID: 32500924 DOI: 10.15252/embj.2019102926

Abstact

Semaphorin ligands interact with plexin receptors to contribute to functions in the development of myriad tissues including neurite guidance and synaptic organisation within the nervous system. Cell-attached semaphorins interact in trans with plexins on opposing cells, but also in cis on the same cell. The interplay between trans and cis interactions is crucial for the regulated development of complex neural circuitry, but the underlying molecular mechanisms are uncharacterised. We have discovered a distinct mode of interaction through which the Drosophila semaphorin Sema1b and mouse Sema6A mediate binding in cis to their cognate plexin receptors. Our high-resolution structural, biophysical and in vitro analyses demonstrate that monomeric semaphorins can mediate a distinctive plexin binding mode. These findings suggest the interplay between monomeric vs dimeric states has a hereto unappreciated role in semaphorin biology, providing a mechanism by which Sema6s may balance cis and trans functionalities.

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Primary Citation of related structures