6FJS image
Entry Detail
PDB ID:
6FJS
Keywords:
Title:
Proteinase~K SIRAS phased structure of room-temperature, serially collected synchrotron data
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-01-23
Release Date:
2018-10-10
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Proteinase K
Chain IDs:A
Chain Length:279
Number of Molecules:1
Biological Source:Parengyodontium album
Ligand Molecules
Primary Citation
De novoprotein structure determination by heavy-atom soaking in lipidic cubic phase and SIRAS phasing using serial synchrotron crystallography.
IUCrJ 5 524 530 (2018)
PMID: 30224955 DOI: 10.1107/S2052252518009223

Abstact

During the past few years, serial crystallography methods have undergone continuous development and serial data collection has become well established at high-intensity synchrotron-radiation beamlines and XFEL radiation sources. However, the application of experimental phasing to serial crystallography data has remained a challenging task owing to the inherent inaccuracy of the diffraction data. Here, a particularly gentle method for incorporating heavy atoms into micrometre-sized crystals utilizing lipidic cubic phase (LCP) as a carrier medium is reported. Soaking in LCP prior to data collection offers a new, efficient and gentle approach for preparing heavy-atom-derivative crystals directly before diffraction data collection using serial crystallography methods. This approach supports effective phasing by utilizing a reasonably low number of diffraction patterns. Using synchrotron radiation and exploiting the anomalous scattering signal of mercury for single isomorphous replacement with anomalous scattering (SIRAS) phasing resulted in high-quality electron-density maps that were sufficient for building a complete structural model of proteinase K at 1.9 Å resolution using automatic model-building tools.

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Primary Citation of related structures