6FJH image
Entry Detail
PDB ID:
6FJH
Keywords:
Title:
Crystal structure of the seleniated LkcE from Streptomyces rochei
Biological Source:
PDB Version:
Deposition Date:
2018-01-22
Release Date:
2018-09-19
Method Details:
Experimental Method:
Resolution:
3.15 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:LkcE
Chain IDs:A, B
Chain Length:442
Number of Molecules:2
Biological Source:Streptomyces rochei subsp. volubilis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
Insights into a dual function amide oxidase/macrocyclase from lankacidin biosynthesis.
Nat Commun 9 3998 3998 (2018)
PMID: 30266997 DOI: 10.1038/s41467-018-06323-w

Abstact

Acquisition of new catalytic activity is a relatively rare evolutionary event. A striking example appears in the pathway to the antibiotic lankacidin, as a monoamine oxidase (MAO) family member, LkcE, catalyzes both an unusual amide oxidation, and a subsequent intramolecular Mannich reaction to form the polyketide macrocycle. We report evidence here for the molecular basis for this dual activity. The reaction sequence involves several essential active site residues and a conformational change likely comprising an interdomain hinge movement. These features, which have not previously been described in the MAO family, both depend on a unique dimerization mode relative to all structurally characterized members. Taken together, these data add weight to the idea that designing new multifunctional enzymes may require changes in both architecture and catalytic machinery. Encouragingly, however, our data also show LkcE to bind alternative substrates, supporting its potential utility as a general cyclization catalyst in synthetic biology.

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