6FJ1 image
Deposition Date 2018-01-19
Release Date 2019-01-30
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6FJ1
Keywords:
Title:
Structure of the Ldtfm-avibactam carbamoyl enzyme
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.69 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:L,D-TRANSPEPTIDASE
Chain IDs:A, B, C
Chain Length:258
Number of Molecules:3
Biological Source:Enterococcus faecium
Primary Citation
Synthesis of Avibactam Derivatives and Activity on beta-Lactamases and Peptidoglycan Biosynthesis Enzymes of Mycobacteria.
Chemistry 24 8081 8086 (2018)
PMID: 29601108 DOI: 10.1002/chem.201800923

Abstact

There is a renewed interest for β-lactams for treating infections due to Mycobacterium tuberculosis and M. abscessus because their β-lactamases are inhibited by classical (clavulanate) or new generation (avibactam) inhibitors, respectively. Here, access to an azido derivative of the diazabicyclooctane (DBO) scaffold of avibactam for functionalization by the Huisgen-Sharpless cycloaddition reaction is reported. The amoxicillin-DBO combinations were active, indicating that the triazole ring is compatible with drug penetration (minimal inhibitory concentration of 16 μg mL-1 for both species). Mechanistically, β-lactamase inhibition was not sufficient to account for the potentiation of amoxicillin by DBOs. Thus, the latter compounds were investigated as inhibitors of l,d-transpeptidases (Ldts), which are the main peptidoglycan polymerases in mycobacteria. The DBOs acted as slow-binding inhibitors of Ldts by S-carbamoylation indicating that optimization of DBOs for Ldt inhibition is an attractive strategy to obtain drugs selectively active on mycobacteria.

Legend

Protein

Chemical

Disease

Primary Citation of related structures